TOP TEN perturbations for AT1G11700 (Arabidopsis thaliana)

Organism: Arabidopsis thaliana
Gene: AT1G11700
Selected probe(set): 262811_at
Platform: Affymetrix Arabidopsis ATH1 Genome Array

Expression of AT1G11700 (262811_at) across 3240 perturbations tested by GENEVESTIGATOR:

24-eBL + glucose (dark) / 24-eBL (dark)

Relative Expression (log2-ratio):4.0542564
Number of Samples:3 / 3
Experimental 24-eBL + glucose (dark)
Seedling samples of Col grown for 5 days on solid medium (0.5x Murashige and Skoog (MS) salts, 1% sucrose, 0.8% agar) under 16h light (80µmol photons m-2 s-1) / 8h dark cycles at 22°C, then washed seven times with water and once with liquid medium (0.5x MS salts), incubated for 24h in liquid medium (0.5x MS salts) in darkness at 22°C with shaking at 140rpm, and then incubated in liquid medium containing 0.1µM 24-epibrassinolide, 3% glucose, and 0.5x MS salts for 3h in darkness at 22°C with shaking at 140rpm.
Control 24-eBL (dark)
Seedling samples of Col grown for 5 days on solid medium (0.5x Murashige and Skoog (MS) salts, 1% sucrose, 0.8% agar) under 16h light (80µmol photons m-2 s-1) / 8h dark cycles at 22°C, then washed seven times with water and once with liquid medium (0.5x MS salts), incubated for 24h in liquid medium (0.5x MS salts) in darkness at 22°C with shaking at 140rpm, and then incubated in liquid medium containing 0.1µM 24-epibrassinolide and 0.5x MS salts for 3h in darkness at 22°C with shaking at 140rpm.

24-eBL + glucose (dark) / mock treated seedling samples

Relative Expression (log2-ratio):3.8229227
Number of Samples:3 / 3
Experimental 24-eBL + glucose (dark)
Seedling samples of Col grown for 5 days on solid medium (0.5x Murashige and Skoog (MS) salts, 1% sucrose, 0.8% agar) under 16h light (80µmol photons m-2 s-1) / 8h dark cycles at 22°C, then washed seven times with water and once with liquid medium (0.5x MS salts), incubated for 24h in liquid medium (0.5x MS salts) in darkness at 22°C with shaking at 140rpm, and then incubated in liquid medium containing 0.1µM 24-epibrassinolide, 3% glucose, and 0.5x MS salts for 3h in darkness at 22°C with shaking at 140rpm.
Control mock treated seedling samples
Seedling samples of Col grown for 5 days on solid medium (0.5x Murashige and Skoog (MS) salts, 1% sucrose, 0.8% agar) under 16h light (80µmol photons m-2 s-1) / 8h dark cycles at 22°C, then washed seven times with water and once with liquid medium (0.5x MS salts), and incubated for 27h in liquid medium (0.5x MS salts) in darkness at 22°C with shaking at 140rpm.

long day (Col-0) / short day study 2 (Col-0)

Relative Expression (log2-ratio):3.718295
Number of Samples:3 / 3
Experimental long day (Col-0)
Leaf samples of Col-0 grown on soil (supplemented with Hoagland medium) under long day conditions (16h light (120 -160μmol photons m-2 s-1) at 20°C / 8h darkness at 18°C) for 21 day.
Control short day study 2 (Col-0)
Leaf samples of Col-0 grown on soil (supplemented with Hoagland medium) under short day conditions (8h light (140 -160μmol photons m-2 s-1) at 20°C / 16h darkness at 18°C) for 35 days.

shift 28°C to 19°C study 2 (35S:RPS4-HS rrs1-11) / 28°C (35S:RPS4-HS rrs1-11)

Relative Expression (log2-ratio):-3.4133396
Number of Samples:3 / 3
Experimental shift 28°C to 19°C study 2 (35S:RPS4-HS rrs1-11)
Leaf samples of 35S:RPS4-HS rrs1-11 plants grown for 3.5 weeks on soil at 28°C and then shifted to 19°C for 8h. Other conditions: growth chamber, 10h light (150-200µmol photons m-2 s-1) / 14h dark cycles, 65% relative humidity.
Control 28°C (35S:RPS4-HS rrs1-11)
Leaf samples of 35S:RPS4-HS rrs1-11 plants grown for 3.5 weeks on soil at 28°C under 10h light (150-200µmol photons m-2 s-1) / 14h dark cycles, 65% relative humidity.

glucose study 2 (dark) / mock treated seedling samples

Relative Expression (log2-ratio):3.3430786
Number of Samples:2 / 3
Experimental glucose study 2 (dark)
Seedling samples of Col grown for 5 days on solid medium (0.5x Murashige and Skoog (MS) salts, 1% sucrose, 0.8% agar) under 16h light (80µmol photons m-2 s-1) / 8h dark cycles at 22°C, then washed seven times with water and once with liquid medium (0.5x MS salts), incubated for 24h in liquid medium (0.5x MS salts) in darkness at 22°C with shaking at 140rpm, and then incubated in liquid medium containing 3% glucose and 0.5x MS salts for 3h in darkness at 22°C with shaking at 140rpm.
Control mock treated seedling samples
Seedling samples of Col grown for 5 days on solid medium (0.5x Murashige and Skoog (MS) salts, 1% sucrose, 0.8% agar) under 16h light (80µmol photons m-2 s-1) / 8h dark cycles at 22°C, then washed seven times with water and once with liquid medium (0.5x MS salts), and incubated for 27h in liquid medium (0.5x MS salts) in darkness at 22°C with shaking at 140rpm.

ABA study 7 (gpa1-4) / solvent treated guard cell samples (gpa1-4)

Relative Expression (log2-ratio):-3.2586212
Number of Samples:3 / 3
Experimental ABA study 7 (gpa1-4)
Isolated guard cell samples of 5 weeks old Arabidopsis thaliana gpa1-4 T-DNA insertion mutant plants, treated with 50mM ABA for 3h.
Control solvent treated guard cell samples (gpa1-4)
Guard cell samples of 5 weeks old Arabidopsis thaliana gpa1-4 T-DNA insertion mutant plants, treated with EtOH for 3h.

ABA study 7 (agb1-2 gpa1-4) / solvent treated guard cell samples (agb1-2 gpa1-4)

Relative Expression (log2-ratio):-3.0976877
Number of Samples:2 / 3
Experimental ABA study 7 (agb1-2 gpa1-4)
Isolated guard cell samples of 5 weeks old Arabidopsis thaliana agb1-2 gpa1-4 T-DNA insertion double mutant plants, treated with 50mM ABA for 3h.
Control solvent treated guard cell samples (agb1-2 gpa1-4)
Guard cell samples of 5 weeks old Arabidopsis thaliana agb1-2 gpa1-4 T-DNA insertion double mutant plants, treated with EtOH for 3h.

ABA study 7 (Col-0) / solvent treated guard cell samples (Col-0)

Relative Expression (log2-ratio):-3.0917654
Number of Samples:3 / 3
Experimental ABA study 7 (Col-0)
Isolated guard cell samples of 5 weeks old Arabidopsis thaliana Col-0 wild-type plants, treated with 50mM ABA for 3h.
Control solvent treated guard cell samples (Col-0)
Guard cell samples of 5 weeks old Arabidopsis thaliana Col-0 wild-type plants, treated with EtOH for 3h.

light/drought (aox1a(sail)) / untreated leaf samples (aox1a(sail))

Relative Expression (log2-ratio):3.0396633
Number of Samples:2 / 2
Experimental light/drought (aox1a(sail))
4-week-old plants, carrying a T-DNA insertion for AOX1a (SAIL_030_D08), grown under normal conditions with watering every 2 days, transferred to moderate light conditions (approximately 250 µE m-2 s-1) with no water (starting 4 d prior to transfer to ensure that soil was dry), for 3 days.
Control untreated leaf samples (aox1a(sail))
4-week-old plants, carrying a T-DNA insertion for AOX1a (SAIL_030_D08) grown under normal conditions with watering every 2 days.

shift 28°C to 19°C study 2 (35S:RPS4-HS) / 28°C (35S:RPS4-HS)

Relative Expression (log2-ratio):-2.989129
Number of Samples:3 / 3
Experimental shift 28°C to 19°C study 2 (35S:RPS4-HS)
Leaf samples of 35S:RPS4-HS plants grown for 3.5 weeks on soil at 28°C and then shifted to 19°C for 8h. Other conditions: growth chamber, 10h light (150-200µmol photons m-2 s-1) / 14h dark cycles, 65% relative humidity.
Control 28°C (35S:RPS4-HS)
Leaf samples of 35S:RPS4-HS plants grown for 3.5 weeks on soil at 28°C under 10h light (150-200µmol photons m-2 s-1) / 14h dark cycles, 65% relative humidity.