TOP TEN perturbations for Q9XF57 (Arabidopsis thaliana)

Organism: Arabidopsis thaliana
Gene: Q9XF57
Selected probe(set): 260844_at
Platform: Affymetrix Arabidopsis ATH1 Genome Array

Expression of Q9XF57 (260844_at) across 3240 perturbations tested by GENEVESTIGATOR:

shift low to high light study 3 (2h) / low light study 4 (6h)

Relative Expression (log2-ratio):1.6743374
Number of Samples:3 / 3
Experimental shift low to high light study 3 (2h)
Detached rosette leaves of 3.5-week-old Col-0 plants were kept in a growth chamber for 6h under low light (65µmol photons m-2 s-1) at 22°C, then exposed for 2h to high light (1300µmol photons m-2 s-1) at 22°C, and then harvested.
Control low light study 4 (6h)
Detached rosette leaves of 3.5- week-old Col-0 plants were kept in a growth chamber for 6h under low light (65µmol photons m-2 s-1) at 22°C and then harvested.

circadian clock study 9 (18h dark) / circadian clock study 9 (6h dark)

Relative Expression (log2-ratio):1.5597553
Number of Samples:3 / 3
Experimental circadian clock study 9 (18h dark)
Shoot samples of Col plants grown for 13.5 days on soil under 12h light / 12h dark cycles at 22°C, then, starting at the beginning of the dark period on day 14, kept for 18h in darkness (i.e. samples were harvested 6h after the beginning of the subjective light period on day 15).
Control circadian clock study 9 (6h dark)
Shoot samples of Col plants grown for 13.5 days on soil under 12h light / 12h dark cycles at 22°C, then, starting at the beginning of the dark period on day 14, kept for 6h in darkness.

bzr1-1Dxbri1-116 / bri1-116

Relative Expression (log2-ratio):-1.5446539
Number of Samples:3 / 3
Experimental bzr1-1Dxbri1-116
bzr1-1Dbri1-116 double mutant in Col-0 background. bzr1-1D is a dominant mutation which stabilizes the BZR1 protein. The de-etiolated phenotype of the null bri1-116 mutant grown in the dark is completely suppressed by the bzr1-1D mutation.
Control bri1-116
bri1-116 null mutant in Col-0 background. bri1-116 is a severe BR-perception mutant.

heat study 11 (mbf1c) / untreated seedling samples (mbf1c)

Relative Expression (log2-ratio):1.5071249
Number of Samples:3 / 3
Experimental heat study 11 (mbf1c)
Seedling samples of mbf1c grown for 11 days on peat pellets under 14h light (100μmol photons m-2 s-1) / 10h dark cycles, 70% relative humidity at 21°C, then transferred to 40°C (100μmol photons m-2 s-1) for 1h.
Control untreated seedling samples (mbf1c)
Seedling samples of mbf1c grown for 11 days on peat pellets under 14h light (100μmol photons m-2 s-1) / 10h dark cycles, 70% relative humidity at 21°C.

cold study 16 (atcsp1-1) / polysomal RNA (untreated atcsp1-1)

Relative Expression (log2-ratio):-1.5046587
Number of Samples:2 / 2
Experimental cold study 16 (atcsp1-1)
Polysomal RNA from rosettes of atcsp1-1 plants grown for 25 days on soil in a growth chamber (16h light (100μmol photons m-2 s-1) / 8h dark cycles) at 23°C, then placed at 4°C (50μmol photons m-2 s-1) for 12h. The cold treatment started 2h after the onset of light (ZT2). Polysomes were isolated by centrifugation through sucrose gradients. Other growth conditions: soil contained 150g of Osmocote 14-14-14 fertilizer (Scotts #90036) and 75g Marathon pesticide (Crop Production Services) per 3.4L.
Control polysomal RNA (untreated atcsp1-1)
Polysomal RNA from rosettes of atcsp1-1 plants grown for 25 days and 14h on soil in a growth chamber (16h light (100μmol photons m-2 s-1) / 8h dark cycles) at 23°C. Samples were harvested 14h after the onset of light (ZT14). Polysomes were isolated by centrifugation through sucrose gradients. Other growth conditions: soil contained 150g of Osmocote 14-14-14 fertilizer (Scotts #90036) and 75g Marathon pesticide (Crop Production Services) per 3.4L.

heat study 6 (Col-0) / untreated all aerial tissue samples (Col-0)

Relative Expression (log2-ratio):1.5027733
Number of Samples:3 / 2
Experimental heat study 6 (Col-0)
Aeral tissue samples of Col-0 plants grown on soil for 8 weeks under 8h light / 16h dark cycles at 24°C, then treated with 37°C for 2h.
Control untreated all aerial tissue samples (Col-0)
Aeral tissue samples of Col-0 plants grown on soil for 8 weeks under 8h light / 16h dark cycles at 24°C.

heat study 6 (msh1-1 recA3-1) / untreated all aerial tissue samples (msh1-1 recA3-1)

Relative Expression (log2-ratio):1.4807205
Number of Samples:3 / 4
Experimental heat study 6 (msh1-1 recA3-1)
Aeral tissue samples of msh1-1 recA3-1 double mutant plants grown on soil for 8 weeks under 8h light / 16h dark cycles at 24°C, then treated with 37°C for 2h.
Control untreated all aerial tissue samples (msh1-1 recA3-1)
Aeral tissue samples of msh1-1 recA3-1 double mutant plants grown on soil for 8 weeks under 8h light / 16h dark cycles at 24°C.

heat study 11 (Col) / untreated seedling samples (Col)

Relative Expression (log2-ratio):1.4601936
Number of Samples:3 / 3
Experimental heat study 11 (Col)
Seedling samples of Col grown for 11 days on peat pellets under 14h light (100μmol photons m-2 s-1) / 10h dark cycles, 70% relative humidity at 21°C, then transferred to 40°C (100μmol photons m-2 s-1) for 1h.
Control untreated seedling samples (Col)
Seedling samples of Col grown for 11 days on peat pellets under 14h light (100μmol photons m-2 s-1) / 10h dark cycles, 70% relative humidity at 21°C.

heat study 2 (ws) / untreated leaf samples (ws)

Relative Expression (log2-ratio):1.4344759
Number of Samples:2 / 2
Experimental heat study 2 (ws)
Wild type (ws) leaf samples after one hour heat treatment (37°C).
Control untreated leaf samples (ws)
Not available.

shift 28°C to 19°C (35S:RPS4-HS eds1-2) / 28°C (35S:RPS4-HS eds1-2)

Relative Expression (log2-ratio):-1.3816576
Number of Samples:3 / 3
Experimental shift 28°C to 19°C (35S:RPS4-HS eds1-2)
Leaf samples of 35S:RPS4-HS eds1-2 plants grown for 3.5 weeks on soil at 28°C and then shifted to 19°C for 2h. Other conditions: growth chamber, 10h light (150-200µmol photons m-2 s-1) / 14h dark cycles, 65% relative humidity.
Control 28°C (35S:RPS4-HS eds1-2)
Leaf samples of 35S:RPS4-HS eds1-2 plants grown for 3.5 weeks on soil at 28°C under 10h light (150-200µmol photons m-2 s-1) / 14h dark cycles, 65% relative humidity.