TOP TEN perturbations for 38621_at (Homo sapiens)
Organism: Homo sapiens
Gene: 38621_at
Selected probe(set): 215537_x_at
Platform: Affymetrix Human Genome U133 Plus 2.0 Array
Expression of 38621_at (215537_x_at) across 6674 perturbations tested by GENEVESTIGATOR:
esophagus cancer study 1 (PDX; squamous cell carcinoma, NOS; metastatic) / esophagus cancer study 1 (PDX; squamous cell carcinoma, NOS; primary)
Relative Expression (log2-ratio):2.7969656Number of Samples:2 / 3
Experimental | esophagus cancer study 1 (PDX; squamous cell carcinoma, NOS; metastatic) |
Patient-derived xenograft (PDX) samples generated in female athymic nude mice from a metastasis of patients with primary squamous cell carcinoma, NOS of the oesophagus (subcutaneously implanted). Metastatic site of patient tumor sample is not reported. | |
Control | esophagus cancer study 1 (PDX; squamous cell carcinoma, NOS; primary) |
Patient-derived xenograft (PDX) samples generated in female athymic nude mice from patients with primary squamous cell carcinoma, NOS of the oesophagus (subcutaneously implanted). |
G-CSF study 1 / untreated leukocyte sample
Relative Expression (log2-ratio):2.59906Number of Samples:5 / 5
Experimental | G-CSF study 1 |
Peripheral blood samples from normal donors for allogenic PBSC transplantation obtained after administration of granulocyte-colony stimulating factor (G-CSF; 10μg/kg/day for five days). Whole blood leukocyte RNA was purified from each sample and used to generate cRNAs. | |
Control | untreated leukocyte sample |
Peripheral blood samples from normal donors for allogenic PBSC transplantation obtained before administration of granulocyte-colony stimulating factor (G-CSF). Whole blood leukocyte RNA was purified from each sample and used to generate cRNAs. |
brain tumor study 1 (medulloblastoma) / normal brain tissue
Relative Expression (log2-ratio):2.4199219Number of Samples:22 / 12
Experimental | brain tumor study 1 (medulloblastoma) |
Primary tumor tissue sample from the brain of patients with medulloblastoma. | |
Control | normal brain tissue |
Histologically normal and non-neoplastic tissue sample from different brain anatomical sites of patients with primary brain tumors. |
doxorubicin study 3 / untreated MCF-7 cell sample
Relative Expression (log2-ratio):-2.3694468Number of Samples:2 / 2
Experimental | doxorubicin study 3 |
MCF7 cells treated with 2uM doxorubicin for 24 hours. ATC code: | |
Control | untreated MCF-7 cell sample |
MCF-7 cells untreated. |
medulloblastoma study 1 / non-tumor brain tissue
Relative Expression (log2-ratio):2.3495893Number of Samples:17 / 9
Experimental | medulloblastoma study 1 |
Primary tumor tissue sample from the infratentorial brain of pediatric patients with classical medulloblastoma. | |
Control | non-tumor brain tissue |
Histologically normal brain tissue at rapid autopsy from patients who died from atypical teratoid/rhabdoid tumor. |
septic shock study 3 (D1; survivor) / normal blood sample
Relative Expression (log2-ratio):2.2922382Number of Samples:34 / 22
Experimental | septic shock study 3 (D1; survivor) |
Blood samples from patients (survivors) collected at day 1 (D1) after the septic shock onset. According to day 28 survival status, patients were classified as survivors. Septic shock patients were identified according to the diagnostic criteria of the American College of Chest Physicians/Society of Critical Care Medicine (1992). The onset of septic shock was defined as the beginning of vasopressor therapy in combination with an identifiable site of infection, persisting hypotension - despite fluid resuscitation - and evidence of a systemic inflammatory response manifested by at least two of the following criteria: a) temperature >38ºC or <36ºC; b) heart rate >90 beats/min; c) respiratory rate >20 breaths/min; d) white blood cell count >12,000/mm3 or <4000/mm3. Excluded were subjects that were less than 18 years old and had aplasia or immunosuppressive disease (e.g. HIV infection). | |
Control | normal blood sample |
Blood samples from healthy subjects. |
B-ALL study 1 (hyperdiploid) / normal bone marrow sample
Relative Expression (log2-ratio):2.2661915Number of Samples:40 / 74
Experimental | B-ALL study 1 (hyperdiploid) |
Bone marrow samples of patients with hyperdiploid B-ALL (hyperdiploid karyotype). | |
Control | normal bone marrow sample |
Non-leukemic and healthy bone marrow sample. |
conditioned medium study 1 (HS5) / untreated monocyte (CD14+) sample
Relative Expression (log2-ratio):2.2279263Number of Samples:2 / 2
Experimental | conditioned medium study 1 (HS5) |
CD14+ monocytes treated with HS5 conditioned medium (CM) for 48h. | |
Control | untreated monocyte (CD14+) sample |
Untreated CD14+ monocytes from two different donors. |
septic shock study 3 (D2; survivor) / normal blood sample
Relative Expression (log2-ratio):2.174778Number of Samples:12 / 22
Experimental | septic shock study 3 (D2; survivor) |
Blood samples from patients (survivors) collected at day 2 (D2) after the septic shock onset. According to day 28 survival status, patients were classified as survivors. Septic shock patients were identified according to the diagnostic criteria of the American College of Chest Physicians/Society of Critical Care Medicine (1992). The onset of septic shock was defined as the beginning of vasopressor therapy in combination with an identifiable site of infection, persisting hypotension - despite fluid resuscitation - and evidence of a systemic inflammatory response manifested by at least two of the following criteria: a) temperature >38ºC or <36ºC; b) heart rate >90 beats/min; c) respiratory rate >20 breaths/min; d) white blood cell count >12,000/mm3 or <4000/mm3. Excluded were subjects that were less than 18 years old and had aplasia or immunosuppressive disease (e.g. HIV infection). | |
Control | normal blood sample |
Blood samples from healthy subjects. |
adefovir study 1 (50uM) / vehicle (DMSO) treated HepG2 sample
Relative Expression (log2-ratio):2.1738806Number of Samples:3 / 21
Experimental | adefovir study 1 (50uM) |
HepG2 cells treated with compound: adefovir (50uM; CAS no.:106941-25-7) for 24 hours. Adefovir is non-hepatotoxic. HepG2 cells were treated with the IC20 concentration measured after 24 hours. ATC code:--- | |
Control | vehicle (DMSO) treated HepG2 sample |
HepG2 cells treated with DMSO (0.5% v/v) as solvent control for 24 hours. |