TOP TEN perturbations for 39024_at (Homo sapiens)
Organism: Homo sapiens
Gene: 39024_at
Selected probe(set): 210793_s_at
Platform: Affymetrix Human Genome U133 Plus 2.0 Array
Expression of 39024_at (210793_s_at) across 6674 perturbations tested by GENEVESTIGATOR:
lactic acid study 1 (hypoxia) / untreated breast epithelial cell sample
Relative Expression (log2-ratio):-3.4254885Number of Samples:3 / 3
Experimental | lactic acid study 1 (hypoxia) |
Breast epithelial cells exposed to 25mM lactic acid of pH6.7 and 2% hypoxia. ATC code: | |
Control | untreated breast epithelial cell sample |
Breast epithelial cells in control media under normoxia. |
oncolytic herpes simplex virus study 2 / mock infected peripheral nerve sheath tumor (S462) cell sample
Relative Expression (log2-ratio):-3.158268Number of Samples:3 / 3
Experimental | oncolytic herpes simplex virus study 2 |
Human malignant peripheral nerve sheath tumor (S462) cells infected with G207, an ICP34.5-deleted oncolytic herpes simplex virus (oHSV) for 6 hours. | |
Control | mock infected peripheral nerve sheath tumor (S462) cell sample |
Human malignant peripheral nerve sheath tumor (S462) cells mock infected for 6 hours. |
adefovir study 1 (50uM) / vehicle (DMSO) treated HepG2 sample
Relative Expression (log2-ratio):-3.0867233Number of Samples:3 / 21
Experimental | adefovir study 1 (50uM) |
HepG2 cells treated with compound: adefovir (50uM; CAS no.:106941-25-7) for 24 hours. Adefovir is non-hepatotoxic. HepG2 cells were treated with the IC20 concentration measured after 24 hours. ATC code:--- | |
Control | vehicle (DMSO) treated HepG2 sample |
HepG2 cells treated with DMSO (0.5% v/v) as solvent control for 24 hours. |
B-CLL study 11 (DMSO) / vehicle (DMSO) treated normal B-cell sample
Relative Expression (log2-ratio):-2.9744844Number of Samples:4 / 4
Experimental | B-CLL study 11 (DMSO) |
Peripheral blood mononuclear cells (PBMCs) obtained from chronic lymphocytic leukemia (CLL) patients and in vitro treated with vehicle (DMSO) for 4 hours. PBMCs’ samples contained 90% CD19+ CD5+ B lineage CLL cells (B-CLL). Inclusion criteria: untreated CLL patients or at least 1 month after chemotherapy. Exclusion criteria: patients with active infections or other serious medical conditions or with white blood cell (WBC) counts of 15,000/l. | |
Control | vehicle (DMSO) treated normal B-cell sample |
MACS purified resting B-cells from healthy donor peripheral blood treated with vehicle (DMSO) for 4 hours. |
glioma study 16 (LN-18) / normal astrocyte sample
Relative Expression (log2-ratio):2.957323Number of Samples:2 / 3
Experimental | glioma study 16 (LN-18) |
Human glioma cell line LN018 was cultured in DMEM supplemented with 10% FCS (fetal calf serum) and antibiotics at 37C and 5% CO2. | |
Control | normal astrocyte sample |
Normal brain astrocytes. Clonetics normal human astrocytes (NHA) from Cambrex (primary-derived cultures) and cultured according to the manufacturer's recommendations. |
TNF-ɑ; TGF-ß2 study 1 (late) / TNF-ɑ; TGF-ß2 study 1 (early)
Relative Expression (log2-ratio):-2.8441277Number of Samples:6 / 5
Experimental | TNF-ɑ; TGF-ß2 study 1 (late) |
ARPE-19 retina pigment epithelial cell samples treated with TNF-ɑ (10 ng/ml) and TGF-ß2 (5 ng/ml). Samples were taken 42 and 60 hours after treatment. | |
Control | TNF-ɑ; TGF-ß2 study 1 (early) |
ARPE-19 retina pigment epithelial cell samples treated with TNF-ɑ (10 ng/ml) and TGF-ß2 (5 ng/ml). Samples were taken 1 hour and 6 hours after treatment. |
stem cell differentiation study 41 (T3pi) / undifferentiated hES-T3 cell sample
Relative Expression (log2-ratio):2.7782383Number of Samples:2 / 3
Experimental | stem cell differentiation study 41 (T3pi) |
Sample of pancreatic islet-like cell clusters differentiated from human embryonic stem cells T3 with female karyotype. | |
Control | undifferentiated hES-T3 cell sample |
Undifferentiated human embryonic stem cells T3. |
PCB153 study 1 (24h; 70uM) / PCB153 study 1 (30min; 70uM)
Relative Expression (log2-ratio):-2.7139034Number of Samples:3 / 2
Experimental | PCB153 study 1 (24h; 70uM) |
HK-2 cell line (8th generation) were treated with 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) for 6 hours. Cells were grown in keratinocyte-serum free medium supplemented with 5ng/ml recombinant epidermal growth factor, 0.05mg/ml bovinepituitary extract and 1x penicillin-streptomycin. ATC code:--- | |
Control | PCB153 study 1 (30min; 70uM) |
HK-2 cell line (8th generation) were treated with 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) for 30 minutes. Cells were grown in keratinocyte-serum free medium supplemented with 5ng/ml recombinant epidermal growth factor, 0.05mg/ml bovinepituitary extract and 1x penicillin-streptomycin. ATC code:--- |
PCB153 study 1 (24h; 70uM) / untreated HK-2 cell sample
Relative Expression (log2-ratio):-2.6355667Number of Samples:3 / 4
Experimental | PCB153 study 1 (24h; 70uM) |
HK-2 cell line (8th generation) were treated with 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) for 6 hours. Cells were grown in keratinocyte-serum free medium supplemented with 5ng/ml recombinant epidermal growth factor, 0.05mg/ml bovinepituitary extract and 1x penicillin-streptomycin. ATC code:--- | |
Control | untreated HK-2 cell sample |
HK-2 cell line (8th generation) grown in keratinocyte-serum free medium supplemented with 5ng/ml recombinant epidermal growth factor, 0.05mg/ml bovinepituitary extract and 1x penicillin-streptromycin. |
epigallocatechin gallate study 1 (45840ng/ml) / vehicle (DME) treated bronchial epithelial cell sample
Relative Expression (log2-ratio):-2.6087332Number of Samples:3 / 17
Experimental | epigallocatechin gallate study 1 (45840ng/ml) |
Bronchial epithelial cells (NHBE) treated with epigallocatechin gallate (45840ng/ml; vendor: Santa Cruz / catalog number: sc-200802 / catalog name: (-)-Epigallocatechin Gallate) for 6 hours. For treatment primary cells were seeded at a density of 50'000 cells/well in pre-coated rat tail collagen type I 96-well plates for 24 hours followed by 4 hours starvation. NHBE cells were isolated from different Caucasian, healthy and non-smoker donors from the airway located above the bifurcation of the lungs (tracheal/bronchial). ATC code:--- | |
Control | vehicle (DME) treated bronchial epithelial cell sample |
Bronchial epithelial cells (NHBE) treated with vehicle (DME) for 6 hours. For treatment primary cells were seeded at a density of 50'000 cells/well in pre-coated rat tail collagen type I 96-well plates for 24 hours followed by 4 hours starvation. NHBE cells were isolated from different Caucasian, healthy and non-smoker donors from the airway located above the bifurcation of the lungs (tracheal/bronchial). |