TOP TEN perturbations for 39637_at (Homo sapiens)
Organism: Homo sapiens
Gene: 39637_at
Selected probe(set): 224959_at
Platform: Affymetrix Human Genome U133 Plus 2.0 Array
Expression of 39637_at (224959_at) across 6674 perturbations tested by GENEVESTIGATOR:
ulcerative colitis study 5 (baseline; non-responder) / normal colon mucosa tissue
Relative Expression (log2-ratio):-5.025343Number of Samples:16 / 6
Experimental | ulcerative colitis study 5 (baseline; non-responder) |
Colonic mucosal biopsies derived from ulcerative colitis patients who are non-responders to infliximab treatment. Biopsies were taken within a week prior to the first intravenous infusion of infliximab; the response to infliximab was assessed 4 to 6 weeks after the first infliximab treatment. The response was defined as a complete mucosal healing with a decrease of at least 3 points on the histological score for Crohn's disease (CDc) and as a decrease to a Mayo endoscopic subscore of 0 or 1 with a decrease to grade 0 or 1 on the histological score for ulcerative colitis (UC). More strict response criteria were used for Crohn's ileitis (CDi). More baseline information about the patients are available in the publication. | |
Control | normal colon mucosa tissue |
Colonic mucosal biopsy from control subject obtained at the endoscopy for polyps screening. |
colorectal adenoma study 4 (large) / adjacent colon mucosa tissue
Relative Expression (log2-ratio):-4.6626654Number of Samples:3 / 7
Experimental | colorectal adenoma study 4 (large) |
Rectum biopsies of colorectal adenomas (size: 3cm - 4cm). | |
Control | adjacent colon mucosa tissue |
Biopsies of rectum mucosa from adjacent tumor tissue. |
colorectal cancer study 33 (carcinoma; cecum) / normal cecum tissue
Relative Expression (log2-ratio):-4.14909Number of Samples:4 / 2
Experimental | colorectal cancer study 33 (carcinoma; cecum) |
Primary tumor samples derived from the cecum of patients with carcinoma. | |
Control | normal cecum tissue |
Normal cecal tissue samples. |
colorectal cancer study 13 (tvvad) / normal colon tissue
Relative Expression (log2-ratio):-4.1458044Number of Samples:3 / 3
Experimental | colorectal cancer study 13 (tvvad) |
Colon biopsies derived from patients with low grade tubulovillous/villous adenoma. | |
Control | normal colon tissue |
Colon biopsies derived from healthy controls. |
hepatocyte (ESC) / Hep-G2
Relative Expression (log2-ratio):4.111787Number of Samples:8 / 9
Experimental | hepatocyte (ESC) |
Hepatocyte-like cells differentiated from embryonic stem cells (ESC) | |
Control | Hep-G2 |
Human primary cancer cell line derived from the liver of a patient with hepatocellular carcinoma. Synonyms:HEP-G2; Hep G2; HEP G2; HepG2; HEPG2 Cellosaurus code: |
colorectal adenoma study 7 (colonic mucosa) / normal colon mucosa sample
Relative Expression (log2-ratio):-4.1097393Number of Samples:5 / 5
Experimental | colorectal adenoma study 7 (colonic mucosa) |
Colonic mucosa samples obtained by laser capture microdissection (LCM) from patients with colorectal adenoma. | |
Control | normal colon mucosa sample |
Histopathological normal colon mucosa sample obtained by laser capture microdissection (LCM) from the distant normal colon of patients with colorectal cancer. |
colorectal adenoma study 1 (small) / adjacent colon mucosa tissue
Relative Expression (log2-ratio):-4.104724Number of Samples:3 / 4
Experimental | colorectal adenoma study 1 (small) |
Ascending colon biopsies of colorectal adenomas (size: 1cm - 2cm). | |
Control | adjacent colon mucosa tissue |
Biopsies of ascending colon mucosa from adjacent tumor tissue. |
influenza virus study 9 (A/pH1N1) / influenza virus study 4 (A/H1N1)
Relative Expression (log2-ratio):4.08545Number of Samples:3 / 3
Experimental | influenza virus study 9 (A/pH1N1) |
Human carcinoma cell line A549 infected with influenza A virus subtype [A/Singapore/478/2009 (pH1N1)]. Samples were taken 10 hours post-infection. | |
Control | influenza virus study 4 (A/H1N1) |
Human carcinoma cell line A549 infected with influenza A virus subtype A/WSN/33 (H1N1). Samples were taken 10 hours post-infection. |
brefeldin A study 1 (0.5ug/ml; p53HCT116) / untreated p53HCT116 cell sample
Relative Expression (log2-ratio):3.9851189Number of Samples:2 / 3
Experimental | brefeldin A study 1 (0.5ug/ml; p53HCT116) |
Derived human colon carcinoma cell line p53HCT116 with knockout gene for p53 was treated with 0.5 ug/ml brefeldin-A for 24 hours in McCOYs 5A medium supplemented with 10% heat inactivated FBS. ATC code:--- | |
Control | untreated p53HCT116 cell sample |
Derived human colon carcinoma cell line p53HCT116 with knockout gene for p53 was grown in McCOYs 5A medium supplemented with 10% heat inactivated FBS. |
ulcerative colitis study 5 (baseline; responder) / normal colon mucosa tissue
Relative Expression (log2-ratio):-3.979598Number of Samples:8 / 6
Experimental | ulcerative colitis study 5 (baseline; responder) |
Colonic mucosal biopsies derived from ulcerative colitis patients who are responders to infliximab treatment. Biopsies were taken within a week prior to the first intravenous infusion of infliximab; the response to infliximab was assessed 4 to 6 weeks after the first infliximab treatment. The response was defined as a complete mucosal healing with a decrease of at least 3 points on the histological score for Crohn's disease (CDc) and as a decrease to a Mayo endoscopic subscore of 0 or 1 with a decrease to grade 0 or 1 on the histological score for ulcerative colitis (UC). More strict response criteria were used for Crohn's ileitis (CDi). More baseline information about the patients are available in the publication. | |
Control | normal colon mucosa tissue |
Colonic mucosal biopsy from control subject obtained at the endoscopy for polyps screening. |