TOP TEN perturbations for 396_f_at (Homo sapiens)
Organism: Homo sapiens
Gene: 396_f_at
Selected probe(set): 396_f_at
Platform: Affymetrix Human Genome U133 Plus 2.0 Array
Expression of 396_f_at (396_f_at) across 6674 perturbations tested by GENEVESTIGATOR:
atopic dermatitis study 21 (lesional; whole skin) / normal skin tissue
Relative Expression (log2-ratio):-3.022996Number of Samples:5 / 6
Experimental | atopic dermatitis study 21 (lesional; whole skin) |
Lesional full thickness skin samples isolated from patient with moderate-to-severe atopic dermatitis by laser capture microdissection. Patients' cohort characteristics: 3 males and 2 females; age 27-59 years (mean age: 39.4 years); SCORing of Atopic Dermatitis index (SCORAD) ranging from 45-65; total IgE: 14-1821 kU/l; eosinophilic count: 1.4-11.8 %. | |
Control | normal skin tissue |
Full thickness skin samples isolated from healthy subjects by laser capture microdissection. |
HCC study 27 (young; validation) / HCC study 27 (elder; validation)
Relative Expression (log2-ratio):-2.982314Number of Samples:21 / 10
Experimental | HCC study 27 (young; validation) |
Primary tumor tissue samples obtained from the liver of young patients (≤ 40 years old) with hepatocellular carcinoma assigned to a validation cohort. | |
Control | HCC study 27 (elder; validation) |
Primary tumor tissue samples obtained from the liver of elder patients (> 40 years old) with hepatocellular carcinoma assigned to a validation cohort. |
atopic dermatitis study 21 (non-lesional; whole skin) / normal skin tissue
Relative Expression (log2-ratio):-2.6992245Number of Samples:5 / 6
Experimental | atopic dermatitis study 21 (non-lesional; whole skin) |
Non-lesional full thickness skin samples isolated from patient with moderate-to-severe atopic dermatitis by laser capture microdissection. Patients' cohort characteristics: 3 males and 2 females; age 27-59 years (mean age: 39.4 years); SCORing of Atopic Dermatitis index (SCORAD) ranging from 45-65; total IgE: 14-1821 kU/l; eosinophilic count: 1.4-11.8 %. | |
Control | normal skin tissue |
Full thickness skin samples isolated from healthy subjects by laser capture microdissection. |
CEBP overexpr. study 1 / empty vector transfected myometrium myocyte sample
Relative Expression (log2-ratio):2.6296492Number of Samples:3 / 3
Experimental | CEBP overexpr. study 1 |
Primary myometrium myocytes transfected with unspecified CEBP (CCAAT/Enhancer Binding Protein) and harvested after 48 hours. Term myocytes from lower uterine segment were obtained pre-labour from elective caesarean section performed at or after 39 weeks in uncomplicated pregnancies with spontaneously established labor. Indication for caesarean section were cephalopelvic disproportion and risk of fetal hypoxia. None of the patients had received uterotonics. All biopsies were taken by the same surgeon. | |
Control | empty vector transfected myometrium myocyte sample |
Primary myometrium myocytes transfected with empty vector PSG5 and harvested after 48 hours. Term myocytes from lower uterine segment were obtained pre-labour from elective caesarean section performed at or after 39 weeks in uncomplicated pregnancies with spontaneously established labor. Indication for caesarean section were cephalopelvic disproportion and risk of fetal hypoxia. None of the patients had received uterotonics. All biopsies were taken by the same surgeon. |
small cell lung cancer study 4 (XCL from CDX) / small cell lung cancer study 4 (cell line)
Relative Expression (log2-ratio):-2.1303034Number of Samples:11 / 4
Experimental | small cell lung cancer study 4 (XCL from CDX) |
Xenograft-derived cell lines (XCL) established from a small cell lung carcinoma (SCLC) publicly available cell lines derived xenografts (CDX derived cell lines). Xenografts were grown in the flanks of a nude mice. Obtained cells were cultivated under conventional tissue culture conditions. | |
Control | small cell lung cancer study 4 (cell line) |
Various small cell lung cancer (SCLC) publicly available cell lines samples. |
ovarian tumor study 11 (low grade) / normal ovarian surface epithelial cell sample
Relative Expression (log2-ratio):-2.0635157Number of Samples:11 / 6
Experimental | ovarian tumor study 11 (low grade) |
Human microdissected tumor cells from the ovary of patients with low grade serous carcinoma. | |
Control | normal ovarian surface epithelial cell sample |
Human microdissected ovarian surface epithelial cell sample from the ovary of healthy individuals. |
hepatocyte (ESC) / HepaRG
Relative Expression (log2-ratio):-2.0346441Number of Samples:8 / 12
Experimental | hepatocyte (ESC) |
Hepatocyte-like cells differentiated from embryonic stem cells (ESC) | |
Control | HepaRG |
Immortalized cancer cell line derived from female patient with hepatocellular carcinoma. Cells can be induced to differentiate into hepatocyte-like cells by exposure to DMSO. Synonyms:Hepa-RG Cellosaurus code: |
HCC study 27 (elder; validation) / HCC study 27 (elder; training)
Relative Expression (log2-ratio):1.9930449Number of Samples:10 / 32
Experimental | HCC study 27 (elder; validation) |
Primary tumor tissue samples obtained from the liver of elder patients (> 40 years old) with hepatocellular carcinoma assigned to a validation cohort. | |
Control | HCC study 27 (elder; training) |
Primary tumor tissue samples obtained from the liver of elder patients (> 40 years old) with hepatocellular carcinoma assigned to a training cohort. |
medulloblastoma study 2 / non-tumor brain tissue
Relative Expression (log2-ratio):1.9847136Number of Samples:4 / 9
Experimental | medulloblastoma study 2 |
Primary tumor tissue sample from the infratentorial brain of pediatric patients with large-cell anaplastic medulloblastoma. | |
Control | non-tumor brain tissue |
Histologically normal brain tissue at rapid autopsy from patients who died from atypical teratoid/rhabdoid tumor. |
pediatric septic shock study 3 (toddler; subclass A) / pediatric septic shock study 3 (toddler)
Relative Expression (log2-ratio):1.8209152Number of Samples:4 / 23
Experimental | pediatric septic shock study 3 (toddler; subclass A) |
Whole blood samples obtained from toddlers (2 – 5 years) with septic shock subclass A. The samples were obtained within 24 hours of admission to the pediatric intensive care unit. One child did not survive. The subclass A was defined based on an empiric, discovery oriented expression filter and unsupervised hierarchical clustering. Patients in subclass A (when all age groups were pooled) had a significantly higher illness severity level (PRISM III score = 20.5, intra-quartile range (IQR) 12.5 – 32.5), a greater degree of organ failure – maximum number of organ failures 3 (IQR 3 - 4), and a higher mortality rate, a significantly higher incidence of documented Gram-positive bacterial infection and were significantly younger compared with other subclasses. | |
Control | pediatric septic shock study 3 (toddler) |
Whole blood obtained from toddlers (2 – 5 years) with septic shock. The samples were obtained within 24 hours of admission to the pediatric intensive care unit (day 1). Two children did not survive. |