TOP TEN perturbations for 39991_at (Homo sapiens)
Organism: Homo sapiens
Gene: 39991_at
Selected probe(set): 206193_s_at
Platform: Affymetrix Human Genome U133 Plus 2.0 Array
Expression of 39991_at (206193_s_at) across 6674 perturbations tested by GENEVESTIGATOR:
melanoma study 34 (metastatic) / normal skin tissue
Relative Expression (log2-ratio):-5.510642Number of Samples:40 / 4
Experimental | melanoma study 34 (metastatic) |
Metastatic tumor tissue sample obtained from the patients with metastatic malignant melanoma of the skin. Metastatic samples composed of 22 macroscopic lymph node metastases, 16 subcutaneous metastases and 2 solid organ metastases (adrenal and brain). | |
Control | normal skin tissue |
Normal skin tissue. |
keratinocyte differentiation study 2 (KLF4 siRNA) / keratinocyte differentiation study 2
Relative Expression (log2-ratio):-5.477042Number of Samples:2 / 2
Experimental | keratinocyte differentiation study 2 (KLF4 siRNA) |
KLF4 (Kruppel-like factor 4) depleted primary neonatal keratinocytes differentiated with 1.2 mM calcium for 3 days. Keratinocytes obtained from freshly isolated foreskin were grown in keratinocyte-SFM medium supplemented with epidermal growth factor and bovine pituitary extract. KLF4 depletion was done using siRNAs: KLF4i(A): CCGAGGAGTTCAACGATCT; KLF4i(B): TGACCAGGCACTACCGTAA. Differentiation was induced at 100% confluency. | |
Control | keratinocyte differentiation study 2 |
Primary neonatal keratinocytes differentiated with 1.2 mM calcium for 3 days. Keratinocytes obtained from freshly isolated foreskin were grown in keratinocyte-SFM medium supplemented with epidermal growth factor and bovine pituitary extract. Differentiation was induced at 100% confluency. |
psoriasis study 11 (lesional; brodalumab; 15d; 700mg) / psoriasis study 11 (lesional; baseline)
Relative Expression (log2-ratio):-5.2138615Number of Samples:8 / 25
Experimental | psoriasis study 11 (lesional; brodalumab; 15d; 700mg) |
Lesional skin punch biopsies derived from patients with moderate to severe plaque psoriasis at day 15 (week 2) after treatment with a single dose (700 mg i.v.) of brodalumab. ATC code: | |
Control | psoriasis study 11 (lesional; baseline) |
Lesional skin punch biopsy samples derived from patients with moderate to severe plaque psoriasis before treatment. |
Merkel cell carcinoma study 3 (metastatic) / normal skin tissue
Relative Expression (log2-ratio):-5.108227Number of Samples:11 / 64
Experimental | Merkel cell carcinoma study 3 (metastatic) |
Metastatic tumor tissue from different metastatic sites (skin, lymph node, parotid gland) of patients with Merkel cell carcinoma of the skin. | |
Control | normal skin tissue |
Normal skin samples from healthy donors. |
Merkel cell carcinoma study 3 (primary) / normal skin tissue
Relative Expression (log2-ratio):-4.877351Number of Samples:19 / 64
Experimental | Merkel cell carcinoma study 3 (primary) |
Primary tumor tissue from the skin of patients with Merkel cell carcinoma. | |
Control | normal skin tissue |
Normal skin samples from healthy donors. |
melanoma study 34 (metastatic) / melanoma study 34 (in situ)
Relative Expression (log2-ratio):-4.8233337Number of Samples:40 / 2
Experimental | melanoma study 34 (metastatic) |
Metastatic tumor tissue sample obtained from the patients with metastatic malignant melanoma of the skin. Metastatic samples composed of 22 macroscopic lymph node metastases, 16 subcutaneous metastases and 2 solid organ metastases (adrenal and brain). | |
Control | melanoma study 34 (in situ) |
Tumor tissue from the skin of patients with melanoma in situ. |
psoriasis study 11 (lesional; brodalumab; 15d; 700mg) / psoriasis study 11 (lesional; placebo; 15d)
Relative Expression (log2-ratio):-4.346346Number of Samples:8 / 5
Experimental | psoriasis study 11 (lesional; brodalumab; 15d; 700mg) |
Lesional skin punch biopsies derived from patients with moderate to severe plaque psoriasis at day 15 (week 2) after treatment with a single dose (700 mg i.v.) of brodalumab. ATC code: | |
Control | psoriasis study 11 (lesional; placebo; 15d) |
Lesional skin punch biopsies derived from patients with moderate to severe plaque psoriasis at day 15 (week 2) after treatment with placebo. |
basal cell carcinoma study 2 / normal skin tissue
Relative Expression (log2-ratio):-4.202609Number of Samples:2 / 64
Experimental | basal cell carcinoma study 2 |
Primary tumor tissue from the skin of patients with basal cell carcinoma (BCC). | |
Control | normal skin tissue |
Normal skin samples from healthy donors. |
RAF1 overexpr. study 1 (retrovirus) / control virus infected MCF7 cell sample
Relative Expression (log2-ratio):-4.055523Number of Samples:2 / 2
Experimental | RAF1 overexpr. study 1 (retrovirus) |
MCF-7 cell line stably transfected with retrovirus containing cDNA for RAF1. The following retroviral construct was used: pLNCRaf-1 contains human Raf-1 cDNA encoding an amino terminally truncated form of Raf-1 that is constitutively active, which is inserted into retroviral vector pLNCX encoding neomycin resistance gene (NeoR). MCF7 cells were maintained in EMEM supplemented with 10% FBS and 20ug/ml insulin. | |
Control | control virus infected MCF7 cell sample |
MCF7 cell line transfected with pZipneo retrovirus, which is an empty retroviral vector encoding neomycine resistance gene (NeoR). MCF7 cells were maintained in EMEM supplemented with 10% FBS and 20ug/ml insulin. |
psoriasis study 11 (lesional; brodalumab; 43d; 700mg) / psoriasis study 11 (lesional; baseline)
Relative Expression (log2-ratio):-3.6912003Number of Samples:8 / 25
Experimental | psoriasis study 11 (lesional; brodalumab; 43d; 700mg) |
Lesional skin punch biopsies derived from patients with moderate to severe plaque psoriasis at day 43 (week 6) after treatment with a single dose (700 mg i.v.) of brodalumab. ATC code: | |
Control | psoriasis study 11 (lesional; baseline) |
Lesional skin punch biopsy samples derived from patients with moderate to severe plaque psoriasis before treatment. |