TOP TEN perturbations for Q84SL2 (Oryza sativa)

Organism: Oryza sativa
Gene: Q84SL2
Selected probe(set): Os.14948.1.S1_at
Platform: Affymetrix Rice Genome Array

Expression of Q84SL2 (Os.14948.1.S1_at) across 1066 perturbations tested by GENEVESTIGATOR:

cold (LTH; 4°C for 48h) / untreated leaf samples (LTH)

Relative Expression (log2-ratio):3.2389116
Number of Samples:3 / 3
Experimental cold (LTH; 4°C for 48h)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then placed to 4°C for 48h.
Control untreated leaf samples (LTH)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then left under the same conditions for 2h, 8h, 24h, 48h, and 72h.

cold (LTH; 4°C for 48h; 29°C for 24h) / cold (LTH; 4°C for 48h)

Relative Expression (log2-ratio):-3.1442842
Number of Samples:3 / 3
Experimental cold (LTH; 4°C for 48h; 29°C for 24h)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then placed to 4°C for 48h, and then transferred back to 29°C for 24h.
Control cold (LTH; 4°C for 48h)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then placed to 4°C for 48h.

imbibition (4h; embryo) / embryo samples from dry seeds

Relative Expression (log2-ratio):2.98812
Number of Samples:3 / 2
Experimental imbibition (4h; embryo)
Embryo samples taken from Nipponbare seeds that were imbibed for 4h in distilled water at 30°C in darkness with continuous air bubbling (aerobic condition).
Control embryo samples from dry seeds
Embryo samples taken from dry seeds of cultivar Nipponbare.

cold (LTH; 4°C for 24h) / untreated leaf samples (LTH)

Relative Expression (log2-ratio):2.7433949
Number of Samples:3 / 3
Experimental cold (LTH; 4°C for 24h)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then placed to 4°C for 24h.
Control untreated leaf samples (LTH)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then left under the same conditions for 2h, 8h, 24h, 48h, and 72h.

imbibition (8h; endosperm) / endosperm samples from dry seeds

Relative Expression (log2-ratio):2.310813
Number of Samples:3 / 2
Experimental imbibition (8h; endosperm)
Endosperm samples taken from Nipponbare seeds that were imbibed for 8h in distilled water at 30°C in darkness with continuous air bubbling (aerobic condition).
Control endosperm samples from dry seeds
Endosperm samples taken from dry seeds of cultivar Nipponbare.

imbibition (8h; embryo) / embryo samples from dry seeds

Relative Expression (log2-ratio):2.2775135
Number of Samples:3 / 2
Experimental imbibition (8h; embryo)
Embryo samples taken from Nipponbare seeds that were imbibed for 8h in distilled water at 30°C in darkness with continuous air bubbling (aerobic condition).
Control embryo samples from dry seeds
Embryo samples taken from dry seeds of cultivar Nipponbare.

cold (LTH; 4°C for 8h) / untreated leaf samples (LTH)

Relative Expression (log2-ratio):2.2759666
Number of Samples:3 / 3
Experimental cold (LTH; 4°C for 8h)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then placed to 4°C for 8h.
Control untreated leaf samples (LTH)
Leaf samples of landrace Li-Jiang-Xin-Tuan-Hei-Gu (LTH) grown till the 3-leaf-stage on soil in a growth chamber under 12h light / 12h dark cycles at 29°C, then left under the same conditions for 2h, 8h, 24h, 48h, and 72h.

A. tumefaciens (1h) / untreated calli samples

Relative Expression (log2-ratio):2.1746178
Number of Samples:2 / 2
Experimental A. tumefaciens (1h)
Calli samples (cultivar Zhenshan 97) harvested 1h after infection with Agrobacterium tumefaciens.
Control untreated calli samples
Not infected calli samples (cultivar Zhenshan 97).

imbibition (4h; endosperm) / endosperm samples from dry seeds

Relative Expression (log2-ratio):2.1682434
Number of Samples:3 / 2
Experimental imbibition (4h; endosperm)
Endosperm samples taken from Nipponbare seeds that were imbibed for 4h in distilled water at 30°C in darkness with continuous air bubbling (aerobic condition).
Control endosperm samples from dry seeds
Endosperm samples taken from dry seeds of cultivar Nipponbare.

imbibition (aerobic; 3h) / embryo samples from dry seeds

Relative Expression (log2-ratio):2.1585016
Number of Samples:3 / 3
Experimental imbibition (aerobic; 3h)
Embryo samples taken from seeds (cv. Amaroo) that were imbibed for 3h under aerobic conditions (seeds were submerged in medium (pH 6.5) containing 0.5mM MES (4-morpholineethanesulfonic acid), 0.5mM CaCl2, 6 mg/l carbenicillin at 30°C in darkness and flasks with the seeds were continuously bubbled with air using spargers below the medium level).
Control embryo samples from dry seeds
Embryo samples taken from dry seeds of cultivar Amaroo.